Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10000356 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10000356 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	59716
Total Scaffold Genes	91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (71.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

59716

Total Scaffold Genes

91 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (71.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004727	Metagenome / Metatranscriptome	426	Y
F045790	Metagenome / Metatranscriptome	152	N
F055822	Metagenome / Metatranscriptome	138	Y
F060853	Metagenome / Metatranscriptome	132	N
F090468	Metagenome / Metatranscriptome	108	Y
F095362	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000035615	F055822	AGGAG	MAGYTREFLIDAYLWRFTKVPSIDIEGLLRLEQIANKTYDTYGKDKFRDYASLDAEYIRNYKANLKR
Ga0214917_1000035625	F045790	AGG	MADIHELREELLEEAMEYLDCKFRTQKKFAMLYFEYKLKQGIPIDNYTTFMPTIYTPQEAIDLAKAMETYVVGGNSK
Ga0214917_1000035626	F060853	AGGA	MAVQQLLDNLYLTPAPWRKWMQTREEIIEDWKAGKDFRIQSGPYCSIRDIEYLRSSYNRVYIIHSRGSIEV
Ga0214917_1000035643	F090468	AGG	MKLLEFTYTKQAGEVSKRAVIELVTPTKFVEGWDVTSLDNNEFANFAQAMGELRRRQHDETMQLLQDFDLKHNYRRFKPESMSDIQVEYV
Ga0214917_100003565	F095362	GGAG	VDIPVQKKFIDWFYNKPFPSYDSKRNRNGFLEEMLDCGNVSHDSLQYWVQEAFHQGAKAQQELDSEK
Ga0214917_1000035653	F004727	AGG	MKVTITYHDNQSFTVEEVVKLATDNYGKTAQVEVMPESTMAYDHIYFGLQQLITHEQLSLLFERDASYQQDIKKLRQEVLYKVTEIIDQVIIDNESKVG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10000356

Overview

Ecosystem & Geography

Associated Families

Sequences