Scaffold Ga0214917_10000354

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000354
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59754
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (64.20%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000370	Metagenome / Metatranscriptome	1221	Y
F005322	Metagenome / Metatranscriptome	404	Y
F006784	Metagenome / Metatranscriptome	364	Y
F009262	Metagenome / Metatranscriptome	320	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000035410	F000370	AGGAG	MKGDVKPVAIASNVSTAVLFAGPTRLRGFIAQSTGSSGTAVINGLLNATTVSTSLTTQVYIPISVGAGQVETLNIPEDGVLYAERNGTAIVDGIGIVSNTSALAITLFIDK
Ga0214917_1000035434	F009262	AGG	MEQIALELARLNKTMAEILHLIQKEMKQSDELRRKYDLEREKEKK
Ga0214917_1000035447	F005322	N/A	MASFLNNIEFDEVRMSPEQKLWRAVFMQALQDAFGICTIPMNRDEHRETSNWYKYLNDDFILVCENAGFDPMQTFEKLQRYNLIKKGIIWNYTANGKRKFADVQFKN
Ga0214917_1000035472	F006784	AGTAGG	MDNIPKIECKTVEIIKSKKTGKTYNTMEDFLKENTIEDLQKDLSITISNEGLELLQKVMNKE