Scaffold Ga0214917_10000321

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000321
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62397
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (55.13%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F004314	Metagenome / Metatranscriptome	444	Y
F027765	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000032153	F004314	N/A	MYDDYDLDYTYASDYSYDLEEYYTQDARDLDEDYARDGHDYESLAYRHYA
Ga0214917_1000032165	F027765	N/A	MNEEDIKQFMTAFEDFMQHSETEQFNHSAWTAAKKYTDHYYEQKAAELEVTVDYYIQEFV
Ga0214917_1000032168	F000744	N/A	MRIMTEATVQLNVQEIGVILSALQLLDIREENRIAREYGSASALYNKLYTVFEQMDTSQTGLRNDVVPSF
Ga0214917_1000032176	F000345	AGGAG	LEHFLEKMTETKNSWQEWWDSDACKNLQKANEEAKQRAVGKYYMLSEEDKLDMVQAICYIMCKAEEEGTSHRGLQDALGIYPAGFWIDNLMDTHNALWSYYHDKKREKELKDDLNTLEDFIK