Scaffold Ga0214917_10000240

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000240
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71102
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (45.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001246	Metagenome / Metatranscriptome	737	Y
F009329	Metagenome / Metatranscriptome	319	Y
F009654	Metagenome	315	Y
F103129	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100002402	F103129	AGGAG	MALQSSLTETNIGIPLNDTYARITLMRCDKEQTLLQVSHYANADARNNNASPVYDRTFMIPFAELQPASDPLAMGYNWLKTQSEYSDAIDC
Ga0214917_1000024059	F009329	AGGAG	MTPYELRFEIFKQAYNMLNDKFSIEHDTARCWNEEPRNTIKMDFPEFPTLEHVLKQAEIINDFVSSK
Ga0214917_1000024065	F001246	GGAGG	MSIAAIIAWANANQALIATVLFAVSEALGANPKVKSNGILSLILLQVQAQLKNKGAKDLT
Ga0214917_1000024074	F009654	N/A	MIEKDPEKMDGVLRKFRISLPEDECVVKLQEYCKFSHTLLKVPVVLKPLCADANCHNNVNHYVNTYGGEKISGYYLITDVGDDTYGCAIYHSIWKNTYGDLIDITPFDDGREYNMFSVLDATDYYSGVSYDGKVYKILEPGLNVV