Scaffold Ga0214917_10000234

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000234
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71599
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (43.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008051	Metagenome	340	Y
F036587	Metagenome / Metatranscriptome	169	Y
F082395	Metagenome / Metatranscriptome	113	Y
F102573	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000023434	F036587	N/A	MGKKSAHTGMSPKDRSAMIMDKFISKNMKREAQQPFQTGIRKDPNVPIHMWPLQDQITYWENRTDADRFVDKYPIYSFWITEVRKLSKVHPTFFDAKINKLQDLVTEMYDNKTFPRDAVNILQKHGVY
Ga0214917_1000023441	F102573	N/A	MLSYNVSKPIYHDITISKPLPDDVAEHVLLNYTCHVDHEGFDLNEIEQAYYRHNNVVLEHDTTWYKDGDAANGAHAIIQPWLMQHNNSELILDHSQFVFRYPVSGEAAEQIKTYAIQRPELLRILTAEFKCGLDLCIDYIFENKVRPVVHIEWDYRDVSDMLIDIDYVETVLQHINWQETLSVIKRFNMLSKYSLDAFQQADFRSMLIFGRKSYKLIPTL
Ga0214917_100002345	F082395	N/A	MKVRINNIECRFSQGRYKIVKWQPNHYYNKQEEYLADGWELDGGFFRRDNVSIQATMFNSPETCYTIAWLKYDADENCCDMETVGPRLLDLNINDRNDFFDVYQIAEDRIRKENKTIDE
Ga0214917_1000023491	F008051	N/A	MIEILGWISTALVLAGYFSNAKGWTKAAMITWIIGDTGWITYDFFIENYSHLVLSLVIIAINVYGIYRIWKKS