Scaffold Ga0214917_10000186

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000186
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78088
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (45.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002226	Metagenome / Metatranscriptome	580	Y
F017641	Metagenome / Metatranscriptome	239	Y
F020890	Metagenome / Metatranscriptome	221	Y
F036668	Metagenome / Metatranscriptome	169	Y
F101032	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000018621	F036668	N/A	MMNTTDILSVREQLQEDLICLLESQFGEVDYLDEVKDLACQIVVDNFNQLN
Ga0214917_1000018624	F101032	N/A	MSDFITISFGPSEDVARLGWWNRKERFDDLNDAKQCGRKQLSQPGTFGYVVIEEGEDFWEVVDELGAQSSAVSITAKRFTYSVQPAQELTLV
Ga0214917_1000018626	F017641	N/A	MSTTQMTEVFHYTTNWKEGKVCQMFIQQVTPEWQECGHQYVAIALNPEKNTSMVMSKPRSHYDTLQWVRRFCGSFSLLY
Ga0214917_1000018642	F020890	N/A	MDSFDDIQIEEFSSFDFVEEMNEGLFDEEDDDKSFDAFLKSNVDF
Ga0214917_1000018667	F002226	GAG	MSLISQKDREMVIEALEYYIHKLKEDNCTEASIYAYNTLLRWIELEYFKNEN