NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10000118

Scaffold Ga0214917_10000118


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000118 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)90060
Total Scaffold Genes102 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001040Metagenome / Metatranscriptome795Y
F006610Metagenome / Metatranscriptome369Y
F013175Metagenome / Metatranscriptome273Y
F014118Metagenome / Metatranscriptome265Y
F040622Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000011823F001040N/AMAVERTKYEMYAEIRYDGRLIDVLDRIRAIRLVLMVHIEQDLGPDRELIKIKIMTPYPARKTFYAIRQLCLGKIETLNAMTYRESTLTKLS
Ga0214917_1000011828F040622AGGAMKTPNLKFILETIMQDQPKPLSIQEKRAFKEAVANFSAMGESVYGKGDIENIVERVKTIVEGADKIMTESDDWMANMALKKENKRMHEDYKDFSEAAMQLKEAQHRMSIAYENIGNHLNRFFEVG
Ga0214917_1000011854F013175AGTAGMDTSTLVKALKTAVRQVIKEELTEILREGLQSTITEIHQEQQKTKPIRNNSKTVQQSKNKVQFLDNKWASVLNETESLHEQEPVSINSFRDLMNENMEEIRMTSQDAINFGAMRQNMRDSITNTTPSLKIMEDPETGKMFEIPQEVQQAMTRDYSSLMKAINKKKGI
Ga0214917_1000011862F006610N/AMKADYRYKAKITDDIADAHETIRVTAKALNEGKLDKASALDNLARAMKKLEAAKYYIDRG
Ga0214917_1000011894F014118N/AMAVGKKNSGFFKQDAVAARMLADAKRPQQLNAAVVQAMKQAERNRLYREAQLAKQKPRFI
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Institute for Fundamental Biomedical Research
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