NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10000111

Scaffold Ga0214917_10000111


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000111 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)92844
Total Scaffold Genes144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)123 (85.42%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Associated Families14

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005167Metagenome / Metatranscriptome410Y
F008806Metagenome327Y
F009327Metagenome / Metatranscriptome319Y
F009741Metagenome / Metatranscriptome313Y
F010448Metagenome / Metatranscriptome303Y
F012098Metagenome / Metatranscriptome283Y
F014843Metagenome / Metatranscriptome259Y
F014968Metagenome258Y
F016389Metagenome / Metatranscriptome247Y
F025484Metagenome / Metatranscriptome201Y
F030064Metagenome186Y
F035737Metagenome / Metatranscriptome171Y
F089937Metagenome / Metatranscriptome108N
F091303Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_10000111102F035737GGAGGMTKKFVVNDEEWAQVLEKGVEDYTDMLFEAVWDGTEDVIPETLSGEPFCGCGACFWREALFFLVPRLIEGYEEGKIELED
Ga0214917_10000111116F009741GAGGMTQHVDGVYDYTKPWRAPIKPDQVAKRYQYNGPWSTNAERLTSQALMVMNIPGADIQAMVRPPLPQIQLFPERYGYERKQPGIDDIVTVDRNYTEPRISWFSGGVAGYQAAERNGLGTN
Ga0214917_10000111117F025484GGAMDGDGMLSMELQARQIAENATRYNGSAPCPTCGVIMNPVEFMANRGHCLSCVTQRNAQRVKGKMA
Ga0214917_10000111119F005167N/AMKENGQIKEIQQGRDNNMTVNSSRSMNAGLEEGATDGKYRKVRPDTEVGTESSATIANRQSLHPFYGYGFATSEYPNKVNPGK
Ga0214917_1000011112F014968GAGMIVQLSKEEVRACADIALNRWMMKFGSVDRPNYAGENKKYLEPEIAANVRTIVAEYAVAKLYKQPFTFPFYTNEEHYFRKDFPDVMPCYEVKSVRTKDEIPVFPKDIRPGVILVGARVLDRDYYSEVEVYGWLPTEECTKDEYHYAPENSWRIPLDKFNDTIPG
Ga0214917_10000111124F014843GGAGMLSLDGVLSSDSGDPIRAGVMLYYALNINNRVAIRTSRKKEDAEHWLNSHGIINYDDLIDYSYHLEGEDLKKRQFILSRSRAPIEMYVDADPSMCSWVFEEQGIPAIMFMNPGYLAVERRPDAPKKVRQWSDIENSITRVNLAKSKEAANPKELEFWDD
Ga0214917_1000011121F091303GGAGGMTDRVPQLNRQALTVNPNRKLRKTEFGFNSNLGYKSKAEPSVVSWANRGKGVQGESVNSQNVASKFVIRKAGKAL
Ga0214917_1000011125F030064N/AMTIGIVTGALISLGVLLSPLYKRIKRFMQWMERFMRDWEGEEASPGRDEVPGVMQRLNKLDGELSQNGGKSTKDTVNKLYANQELVMEAFVEMGERLIAIENCLNKSEINTPNPVN
Ga0214917_1000011129F016389GAGGMKLIRKFAIQGHAIPSSAHSPRGPFPPEVLAGPQMDQAEYHSDSLHVGLDDVKFFKCKDCRTVLETNELEDHDCDDFK
Ga0214917_1000011132F012098AGAAGMPKVHNVGSLFVQVTRFPYEWGNKLVVRGWSQEIEEPYRTATPFIVRLPKYHGLVLGKWGAMKDEEEALSGALARREVTYEDFTEEAGWTPAPESNRETSVDGLYSRFDLMDGAVNVYDRQKHFDMAEAPERG
Ga0214917_1000011140F089937GGAGGVATLAAMSNRLRYELGDIGRSFVYQFVADGTTNRFLIPYSPLDGAYLAINSDGVDVSADVEVEEATGHIVFDDTPAAGDVVIVAGNYFKYFTETEVCQYIDDAFAQHTTFHTDSYGRTMTMANLPTVEEYPVIIYASTLAMYTLATDASFDIDIQAPDGVMIPRSERYRQLMQMIEVRKNQYKELCSQLGIGLYKIDVFSLRRISKTTNEYVPVFEPQEIDNKSPKTRVRLPIPTYGNVKPTPTTVVQDLNIYEGDDYEFSIRLDFEVNNLTPLAEIRSLPGAAVVFAEFTVTKPNITEDGDNQRTLVLSLTGEQTRLLPARSYYDVQLTDAEGVTHTYVSGIIFVTKEVSQ
Ga0214917_1000011158F009327GGAMRGNKVQGRFKIDFENRSINEGIVDELRDPVGTEVDWWLWDDAALAADYNQWVDPIYDVSNQTDGQGRRWNEPFKLPVIMAQQLRGTNIMNERGFYTTDTLRLVVAVADINRLLPAMITDPSIHIKDRVVFHDAVFVPTRVLPRGLYKERYSVVTIDCNQVNAEELVNDPQFQSTPYQIAATVNTNNNYGLDLYGSGAYGS
Ga0214917_1000011171F008806GAGGMSFLLDEDEALRDLLKDMYVTDQKSVTTDGPQRKVGVWFGQPDQEIRNQSYPYITIDMIDIAEAFDRAHRGRVSPAYYADPTTIATGVNWDTDLHDKDMDFPIPVNIDYQITTYARQPRHDRQILAQLLYTKIPLRFAVLNVGPDTQFGTARRLDVMDISKRDITEQGKRLFVNAITVRISSEIAPTTFNKLYKVQELNVTGTTGSQIIGRGEFTAVDPITITTP
Ga0214917_1000011191F010448GAGMKGGDISNVSSLQVVCLTDVVIALVEEEIRKLLGKKIEYKIGNIDLQNANKLWNLANNYGISLELAGYQDQGWTEELLEKAFDKLEKRVVNPFNYWQLYENPDELVAGIPYRANLRGVIDVPGRVARYGSAGVQIDNM
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