Scaffold Ga0214917_10000085

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000085
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 103449
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 97 (78.86%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004762	Metagenome / Metatranscriptome	424	Y
F023107	Metagenome / Metatranscriptome	211	Y
F037064	Metagenome / Metatranscriptome	168	N
F041011	Metagenome / Metatranscriptome	160	N
F065437	Metagenome / Metatranscriptome	127	Y
F066766	Metagenome / Metatranscriptome	126	N
F071220	Metagenome / Metatranscriptome	122	N
F077281	Metagenome / Metatranscriptome	117	N
F091353	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_10000085103	F071220	AGGA	MTNKVKGVVDTVVAIRSTTTTIKNDTKVIALDETNAKELLAKFEANKADKATLEAQYKELQSEIYSLLGYKKVGDKWIGVAEEGTIDGVSVIKVGTQTRTNFDKEKFLQENPELLPLVEAFTSQSTNTILKTTR
Ga0214917_10000085106	F041011	AGG	MHTCQIMLVEADSAEEALSYVRGTITHAETPYPAWSDWHGGLGEGLAGRWSGLFLGWEENRDVLCYAENKVLADDIIKEFVSYRITEAKNLWDEMKKGIGFDVEKSISEYNPYEQRFDDSGMNMWRLQRISKILNNDWCSDTGVYDLQEHTANLQYFKDRLDKNPEKQYLVPVDFHF
Ga0214917_10000085107	F037064	N/A	MERDESKFVIKYASHMLPSAGLKTYGITRFDACFYAGEGHIATVLYEGFAVDIYCDGDTKIYNRSTDQYYTGGADLILGGFDTDTKFHKATEDESLVMDMNSWFDLYCYGEHFDMPSHMLNEAIDMAKEYVYAEYFNAETLLGMPDMLDK
Ga0214917_10000085113	F065437	AGGGGG	MKDDIQERWNEGYYSALNGAKIIRFLGTVPEEFGGTGFPQFLVKLSTGEIIEMEVSKDPEGNDGGFLFGLPDFTLPEFRENLLGRKNA
Ga0214917_10000085120	F077281	N/A	MTNEYKAVNSKTLKRLIDTAKMLNFNQYPEKSHNFSTNGIHVLEMVVQDHKGHTNKDIIHHRASVLASVGGSSEPMEFLLDIRDEDWNNLVDAKAMADSARELNV
Ga0214917_1000008520	F004762	AGGAG	MAKTSEVLNMLFPNGGYVAIGNDYEGIQFLDCEPITKAEFEAGFAQYDAWKAEQDAAKATAKAAAESKLAALGLTTQDLRALGL
Ga0214917_1000008595	F091353	AGGAG	MIKTSIDLFDETCNAVSRGELDKQLVPLKKLIEERLSIVRADADIKDFVVGDRIVLNSSCGTKSLIGDEGTVVAIRRSKITITFDKPKGRFARTNSKGEIYSANAVVPISIVDKI
Ga0214917_1000008597	F023107	AGG	MDNILPSRTVMFVGDFFTLMTTVVLDEKLRNEGEVDNDFAVRVASVFMNEYYGFDVASVANSIGVVDEEGVEV
Ga0214917_1000008598	F066766	AGG	MIKEVELEYTVDTLAKLVRDNYGKNAVEYLVGRLTSVITEKQLKALIDYEKGIDG