Scaffold Ga0214917_10000045

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000045
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 132273
• Total Scaffold Genes: 244
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (35.66%)
• Novel Protein Genes: 31
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (38.71%)
• Associated Families: 31

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F010897	Metagenome / Metatranscriptome	297	Y
F016115	Metagenome / Metatranscriptome	249	Y
F016772	Metagenome / Metatranscriptome	244	Y
F016774	Metagenome / Metatranscriptome	244	Y
F017268	Metagenome / Metatranscriptome	241	Y
F020649	Metagenome / Metatranscriptome	222	Y
F022820	Metagenome / Metatranscriptome	212	Y
F024040	Metagenome / Metatranscriptome	207	Y
F025679	Metagenome / Metatranscriptome	200	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F035200	Metagenome / Metatranscriptome	172	Y
F036564	Metagenome / Metatranscriptome	169	N
F037078	Metagenome / Metatranscriptome	168	N
F038565	Metagenome / Metatranscriptome	165	Y
F039497	Metagenome / Metatranscriptome	163	N
F043788	Metagenome / Metatranscriptome	155	Y
F043789	Metagenome / Metatranscriptome	155	Y
F048121	Metagenome / Metatranscriptome	148	N
F048123	Metagenome / Metatranscriptome	148	Y
F066486	Metagenome / Metatranscriptome	126	Y
F071967	Metagenome / Metatranscriptome	121	Y
F080893	Metagenome / Metatranscriptome	114	Y
F083776	Metagenome / Metatranscriptome	112	Y
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_10000045104	F026210	GGAG	MSHFVNANPLDYDAKYPQTADTHTNDEAKMLVMERNIDKEVMFQTEDGTQFYGKIAGVPNSEHYRVIVNRSETPWEWYVREEAVHFVLDPISKANIM
Ga0214917_10000045106	F066486	AGGA	MKKNDPSYLKIGKFKKKNVYDVDVDMSDHNRTYFLDLGKQVITDDQFINIGFNYALLKGLELAEEIAKKNKKKK
Ga0214917_10000045112	F048121	N/A	MNTTQTQYTWSVKATSGQVVVAPKSYPTLRGAKIASKRFANKTGGQVVSVSAK
Ga0214917_10000045115	F016774	GAGG	MPPKKPKIQFLSEHIASLNHWRDELLKLDKTYFHKDHEKERTIKNMINKYLDDVLEHNKKYNEKPKK
Ga0214917_10000045118	F096610	N/A	MAIRPKTYFVKMTDNTDGTFTISETKVLDKVNQHARHWRSFDKRRLTSKLRNSVLVTK
Ga0214917_1000004512	F010817	AGGAG	LKKFVNVLVLNFLLVSCATVTPDKIQDDVASFDSSTPANYNKDNGGLIALLDNGAVITYQARDRYNKLIEMYKIKFKKEKAIELVENAGVQPYKDRYGNDLFLIDNEHLVYFGVLNSWLKEKVPADNILDKTIDKINN
Ga0214917_10000045126	F036564	N/A	MKMGRVCLDLNYIVDMDNEEMVKRAYECLYEDLMQGVKYGNIGNWIDVIEDKNAREDMIPEFLLEKEDE
Ga0214917_10000045128	F032548	N/A	MKKKQNKDMEKAIKLLAELVDQADEDCPHDCRTIHFTNILEEASEFIKEYRNSK
Ga0214917_10000045129	F027756	GAGG	MNLEDLIDRKILYLNYPINKYAIQEGKVTEISPAKKCIKINADWHLKDNIRIIELFSEDERPKLGFGLPKNEKEAK
Ga0214917_10000045134	F030670	N/A	MNKVIRYIKELEDEFGKPLDKWAVYEEQITAKGHWVFKDAKIVKTFPSPYHARNWMEYDGKRIN
Ga0214917_10000045136	F034827	N/A	MKYTITSRDKEAMVDFDSIKEGEVFSFFDPESVQRGNHSVFMKIKNGSNNIVDLDDGKVYGFSEKKRNTLNDPDEQQGDKVYKLNAKINIIV
Ga0214917_10000045138	F048123	GAG	MEQMKSRYDLNKGKLISYDGEIIDFAETKTIERYEDQVEEIMRLFNLKKGEYILTDESSIGDFGKETINKVLLEKFKKKYGFSLTNKSNISKIAERMYNFRPF
Ga0214917_1000004514	F016772	GGAG	MNKLNLIAIALMGIFITGCSTTNTGGDNQVGGTTAVENALPYIKPAVILACTVVLEQAISPEDRVEKAKMINHISTIVEALTIGQTPTPDQLQKALTDYLPAEKTHWAKYIVAVKDIYAAQFAKINGDAALAVKVLNAIAAGCKDATAEYVN
Ga0214917_10000045144	F024040	N/A	MKEVISHFNMNIYVTGHNWSAKVDIDTKIISKSDWYSEACTRAVESILDQEEKKGVELKIDDYDNFGLGIILLTWDEKNIKNVDEHRVLLTSNVLANAGRWEEYNEVKAYEDKCKEEGL
Ga0214917_1000004515	F009669	N/A	MKNMLNTIFGPNWRSSTSGILTVVAVATAVAIHSDNSLVAFLPDGVEAYVLGISKLIAVVGGIIFALTVKDAKVTGGKVAQTIEAKKRVSKGINNGENI
Ga0214917_10000045150	F039497	N/A	MSEENNFNCQAGNQLRQILYKDIVRYAYESDMTAYQVIGVLESLKYDLLNAMQNLSKDDEEDEI
Ga0214917_10000045164	F071967	N/A	MSNQTEALAICSEFSDEYGIDMENEKSVVVYLKSEYVNELRSMLERKNYKLYSFKVYGDEALVNFIPKKNDIY
Ga0214917_10000045199	F017268	N/A	MNLDLNQLFNIILGALTFLGGWLFTRVFSLFDRQENLMKEINDKTFTDFITLRKEVEAEGRKHQQEIADLALKISTTYVTKESFEAYFDRIEAKLDRNFEIIQQYLMNKNKN
Ga0214917_10000045200	F083776	N/A	VTVSERDLDFFAKKLSLSPEKTFLLLQDPDCLPEIINKVTEDDINGIVDISFPVFVELTIIKYSKDLNYSFEEKEYISEAVGTKFYDLIEYPLQNKYFFTLEQNEDTAKSILVFLGFFYKSLEKLRRSYPSENIYYNIAKNGFENSDKEEISDHLKDWIKVLRRIQNEVWY
Ga0214917_10000045210	F020649	N/A	MFNKIIKWWNDLELYNKVFFILFTPAMLFTLWGMSDLYINYFDELTREDHLQFFLRIFFPVSLATFITVLERRKRKQLIKDIKDYLDK
Ga0214917_10000045230	F038565	N/A	VTNKKKSFKIPDSLLKQIDECSFGGYILFNFSSKGEPQVFTKFDNQINAMALLYYVNNWSQSVDQLNLEATTNQIAKINEKEDFDEDQDGDKDE
Ga0214917_10000045237	F043788	GAGG	MASLDDIYDMVQKLDDSNIEYLLITVQKGKKNGKADIFYSLKDKNSMRILTHGLNQFSKEIDKLDDEGKFE
Ga0214917_1000004528	F080893	GAGG	MKQQTFKITNKNILEGEKANPQNCAIARAIKSKMNKKIKNLSVLPTQVVVEIDKNIFVAEMPKDGTNFIKRFDRGLAVNAFKLNLKFKKGYALV
Ga0214917_1000004538	F043789	N/A	MKKKLSRYEQLIANLDKAAQDLKDASAHAVATLEAHANKIEEINQKYSTSETK
Ga0214917_1000004539	F037078	N/A	MKNQITITTQTFGNTNAFLLEGDKKQIENFHNAMYNYSATNGELHDMGNGKAFYFYAQPEAVLEAMTKVALYALCNKIKAKGMKGGLLALAKQKAQIKFDAIKEGRFLRTAESSDTYNLGTITAERPSDYCGAISNGRD
Ga0214917_1000004560	F022820	N/A	MKHENRISKILEKRVLQGEDPKLIAQIDKYLENLEVVFVKWAKAHPNWKETEE
Ga0214917_1000004563	F007359	N/A	MQLVKQNLGAHWVIGIKGKKDEIEQFHNRIYNWGGTNGELQWMSESFAYFWITLEKLERVMFKYVMNSMSDKLGKKFRGAKGGLKQVVLNRVSNTIKNIPVESFVKTAQVQDFYSIGQVSAEKLDNDS
Ga0214917_1000004568	F035200	GAGG	MNVKYIVLRDGIRVSEDMHTDLAEAEHEAEHWRKIIRTWPDGTKVIIKKIGSEKSEKKA
Ga0214917_1000004570	F016115	AGGAG	LKILEESFTSKGFKLQQVKRDGDIAIYKKQLDDGESENYHYEVVAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCTTIEDANKRFGELQEKLTNYNATAILPSGEKRGRGRPRKNLLTENQNIVA
Ga0214917_1000004574	F010897	GAG	MKLINTTSYCSDKLKEIIKWCMPQGVFLKDIRKIDIGNTKLGWHGRAWGSMRLHVGVPAYNKYIKPYKSGGFRGYLEVNTYTWEESLIELIAHELRHIYQYKKGKFYHGIKKIRKYNMGTKAKLCEVDASLYAMRKVREYRRSNIKFKLT
Ga0214917_1000004584	F025679	N/A	MTKTFKIGEYAVGGKIRVSIPKTLTNIKIDVLDSNYGTGKLVNQYIYYSFDRIRIERDLWQITTTYYTDMITSWITKNWKVELIKNSI