Scaffold Ga0214917_10000038

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000038
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 149598
• Total Scaffold Genes: 205
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 163 (79.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020358	Metagenome	224	Y
F048310	Metagenome	148	N
F051070	Metagenome / Metatranscriptome	144	Y
F088766	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_10000038109	F051070	AGGA	VETLADGLGKLWFLGAGVVAIAAYAVTIKVRLDYLEKNYDKQITALWDQINKLNKER
Ga0214917_10000038151	F088766	AGG	MKHCWPKKMYYVALNKPHTFPDGGWRDFISTPSLGRARYYAKKLKRKYRQIDVYEKGNEPYVLFGSWL
Ga0214917_10000038195	F020358	GGA	MKRFKDYINNAAPLSQEDWEEAVFGVEISEVLKQVNGKWAIVSKKTGKPLAYYDGEGKPSDEWVAKQERRIQFFKHRG
Ga0214917_1000003850	F048310	GAG	MRTQLTREQKIEILGKMGEKYVGNYLAETRKVQHSLDNFDSEKDMTADGKTVEVKVGTPFIVEKSISFKRSQLPKCRGVDEFYYVTIPAPKYKYRWSGWLFRIENTFKCRIRKVTRSNGWIDEMALIPIEQEAVIPIHKVPDSVIAEMMKYTTSNY