NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214917_10000015

Scaffold Ga0214917_10000015


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000015 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)188828
Total Scaffold Genes257 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)190 (73.93%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007110Metagenome / Metatranscriptome357Y
F009680Metagenome / Metatranscriptome314Y
F035281Metagenome / Metatranscriptome172Y
F036210Metagenome / Metatranscriptome170Y
F070037Metagenome / Metatranscriptome123Y
F085623Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000001510F036210GAGGMRSKVIDQFNRKEIQRKYVDQILGELDFMQIKDLLRDYLTKEKDKASNYALESEIRKEAPEVLVDNWEDFSGPATLTEEYEHHV
Ga0214917_1000001513F035281AGGAGMKNLLLVIALMCIGSTSMAGECVNGTCTLRSRAVNVTREVISVPVTVTRRTVEAARNVGRRTVARVRSVVR
Ga0214917_10000015173F009680AGGMSDNLIHFWESIASAAIGIIITMSGFWVMFGRNMTTKADVLAMIETQSPYVHDRQFIMERLNTNKETQAAFAAALQRNTEVMNELKIQIMILGKTLEALEDRIEHK
Ga0214917_10000015176F070037GAGGMNFTESFQEFSSKLSTMDLALYAGIGLVLWVMFKDKLSPVQALIAGLIDKVSNKSASGAVPTPVVTLPSVGPSKKVADTPEDVFFKLVVSWKQTRDLAVQSGCVEAVKVADQMFPFLSPNVCNDQKKDVV
Ga0214917_1000001520F085623GAGMTKIRTLDLDYDLIEIHHNPNLKNKPYLVRIFNYNNNYPEELRLDEKDIQNLYNILRQHKLI
Ga0214917_1000001587F007110N/AVCYKEDSWHPHPSEFDMVCNYCKSMIPEGRVEFLTEYNRPIVCIDCSTEQRAVGFLSYSHKTAPELVMVPANNKESIRRCDRVNRRAR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.