Scaffold Ga0214917_10000002

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000002
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 330017
• Total Scaffold Genes: 436
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 282 (64.68%)
• Novel Protein Genes: 22
• Novel Protein Genes with Ribosome Binding Sites (RBS): 21 (95.45%)
• Associated Families: 22

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001443	Metagenome / Metatranscriptome	693	Y
F005300	Metagenome / Metatranscriptome	405	Y
F006141	Metagenome / Metatranscriptome	380	Y
F008995	Metagenome / Metatranscriptome	324	Y
F013393	Metagenome / Metatranscriptome	271	Y
F014734	Metagenome / Metatranscriptome	260	Y
F016150	Metagenome / Metatranscriptome	249	Y
F016374	Metagenome / Metatranscriptome	247	Y
F024263	Metagenome	206	Y
F024952	Metagenome / Metatranscriptome	203	N
F029985	Metagenome	186	Y
F030372	Metagenome	185	Y
F030663	Metagenome / Metatranscriptome	184	Y
F042790	Metagenome	157	Y
F044299	Metagenome	154	Y
F046245	Metagenome / Metatranscriptome	151	Y
F051684	Metagenome	143	N
F053886	Metagenome	140	Y
F056408	Metagenome / Metatranscriptome	137	Y
F067390	Metagenome	125	Y
F089835	Metagenome / Metatranscriptome	108	N
F102401	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_10000002101	F053886	AGGA	MSRTLIWVLSFSVLGPVPEYGEQAKFKTQAECEQARVQKREEFRAQNKQIVASCHLSTK
Ga0214917_10000002173	F067390	AGGAG	MGRALKIQKNNVGSGSTVTGNPPVTTYNQTILTDAGFPNFGSLTSPATPYNSANTFNSDQFVGVVGGIFTTSTPSATFPEIFCLVNIVLADGTSTFDIASEYAGRIIRQKGSHKFLVAYTYASTADEAMIIGQAYQVASVGTTNWAACGGSADTAVGDIFTATAVGSGTGTVYPVGQCVLSNTATPAAGNMSIEYSVGDSAAVYASYITNKWIRDWNGMTYGTYSSSNLGENIYSSENFYVTNFFTDEGTVTWSGAEIINGVEAPNGSLQLAQVVNVTS
Ga0214917_10000002198	F024952	AGG	VQKLVKIMTTPQYQTYAETMSRLAERHPPAPTPAEVRNQPVMIPGVITQTTNLFQPVAVADLNKESK
Ga0214917_10000002199	F008995	AGGA	MAIQVVNAVSNVAWTTDKVEIATTTANVTFQVLVVQLTYVQANGVPANATMTTPTGNLYANAIVVPGNTVQQYYVGAGNYLNIVTGSGFSATALGTATSATAGSEGI
Ga0214917_10000002227	F042790	AGGA	MNIKLRAAFQTAGILAVICTVSVGVQLLLTGLTADEISKILSVGSITLLVYCMYQLVLSRLEYTQKVNEIVKK
Ga0214917_10000002288	F006141	GGA	MIVEIFLYGFISAFGWWTATHYVIEPHFPPSIEKKAEQK
Ga0214917_10000002290	F005300	AGGAG	MSKRIGPITLDSEAADRITVLTLKEQRAHLKKELTEWKKDPRSDSNPGGKWMHPEDVAINTRMIESLNTVIKYFGE
Ga0214917_10000002294	F024263	AGGA	MSVKIEASDAMLPSLDSLKTTALPMHKLYFELSDVDTWYTIMREARAQFGKNWRSQAHVKRRLEHANLWRLGGSTERVWFEVPDPKFGTWIAIKHAVRQVEPTGK
Ga0214917_10000002315	F029985	GGA	MTKIRAIYRIVILVLLLILCASAMVSSSPMYGGDRPSVARELPAREREVRLNHGVAECVRTAWIGDVNNRIVICVEYRLKKEVK
Ga0214917_10000002323	F016150	AGGAG	MTEPKKSSNPFINMANDAKKKNQELHPGLGKAPKKQGPKPNSKGFGGANVTRRSARGG
Ga0214917_10000002336	F013393	AGGAG	MRHVAGFSNSTRIRFIVNGFGMYGTINDIYTKTATVTHGAALRLAIQKLAYDRRRSSFTGAGRPVGVGITHEGIDVQITLMAN
Ga0214917_10000002342	F102401	AGG	MKHFLIIVAILSVTAWAQVPVHVSKDLHTRAHQPRVPRVKLLRSNPHRFTAIRLQGTNPYDAPDDEFLCSSLARRPKVAPPTDQPDDELSAYVQVRLAVARARAMARYRELHT
Ga0214917_10000002352	F030372	GGA	MNQQTKQLAEQAGFVLDDLPDSVLQPLETFADLLRTANTREVIALCASTINNNINEQKQKTKHRWEIVEALVIVTALIAWATWWYTQSHT
Ga0214917_10000002376	F051684	AGGA	MKFYAWFVKHQDVISGFVSGIALMTAADYFSRGDMAYGCLSLFVSVANLLLSGKKIGQNLEPKE
Ga0214917_100000025	F014734	AGGA	MAQEESAKGVFIEKMLFALLPLIIAGVGYLLNAVSTLNHQITVLESKVSLVVTSDNKQASNTSSELAREKLRQDLTAEIQKNRDSIQQNREHISIHEEKLRQLNQKVGK
Ga0214917_1000000259	F089835	AGGA	MRLSPLDERMNADIDALIAKLEAAKTSRTYLQRASLVGKVAEQCQSYEFYWEDRLYSLMD
Ga0214917_1000000261	F056408	GGAG	MDEAEIAVNKRIKQLMGQTLDDKFKETWSTMTPEDLEKFVKHFAELLIRDCADTAYRFDGLTLGQGYTIAKHIKKNYEVES
Ga0214917_1000000262	F044299	GAGG	VNQISQYLVSIDRPPYVNGRRVGQATPCVSYGEPAWFISFLDGYMHASDPVFTDEDGLNGAPSVREYATNLGYEPCTN
Ga0214917_1000000263	F030663	AGGA	MYELIFTFLIVTKAGVPGFHIERMSQFRELEDCEKTKTSMVVYMDKLVRENKMFPGVFECQKVQR
Ga0214917_1000000264	F016374	AGG	MNKEITLTPTGGRFYRAMTFHWVTVAVLMPPLAIAMIAAILNPFWFRDSMFNFVERKINEFTRWRNNVKYRIYLNCDPVVWHTLKGDLK
Ga0214917_1000000288	F001443	AGGAG	MPMYETTVRTPQGEEKKRIYAATPQEAKKLFEQQYGGPRAVPYIPHIIPS
Ga0214917_1000000290	F046245	N/A	MLDYVVTFFAVFATDLIYVYFVRSIQDNRPMMAAWWSVAVTFTASVAVINYTADHWALIPALLGAYCGTLFGMWIKQRINSD