Scaffold Ga0228702_1036544

Overview

Basic Information

• Taxon OID: 3300022748
• Scaffold ID: Ga0228702_1036544
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1427
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F017972	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228702_10365442	F017972	GGAGG	VKTRHLQLVTSTHSVTTSSKSSVQSHFGPVNPASTTWLAQETLRVRQLRQLTELLNSLESVVANLNYKSSEALDTLLIATRGVRVALSATPIEEGGISE
Ga0228702_10365443	F003863	GAG	MKEVSGKQAIEYRNYRRARDRALARLSQLYADDYKRLLLEERENDEQEGKKWVGVADSSRITITTRSRESAIPAVAGRTDYESPDDSYDGGEA
Ga0228702_10365445	F001477	GGAG	MSNVYTIHPKKSDLILFYEVIEPDGGNHWGGGDAASAIQWLSLAPAGSRVLVSAWDSDEEDAHLVGQTIDITEIVRAASL
Ga0228702_10365446	F000821	GGAGG	MNKEYLEAKFDLCINQAEKNIKEEEIAEAIKNLKRANSALSQLFGFDEGDDNE