NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228702_1032818

Scaffold Ga0228702_1032818


Overview

Basic Information
Taxon OID3300022748 Open in IMG/M
Scaffold IDGa0228702_1032818 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1546
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003687Metagenome / Metatranscriptome473Y
F055679Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0228702_10328181F055679GGAGMDLTTGWKPHDIPGGYRLVYSDHLVGGISIVTGPRGSGLMASNDPGQETTYEVWFPGLADPTGHLTLDEIKGIIKYLRQREEEFIYTACSDYENN
Ga0228702_10328184F003687AGGMSPASVEQLLIQDARLLARRDAPVIDQEIESARQQALEIFYQWQDGLAQFQDLIPFVVVLEKKVDLNRALLKWEQEHMMD

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