Scaffold Ga0228702_1019423

Overview

Basic Information

• Taxon OID: 3300022748
• Scaffold ID: Ga0228702_1019423
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2282
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F007469	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228702_10194231	F002162	GGA	MPKYDYMCDGEGSLIVLDLPMDHKIPHCQVCGTQLRRVFTAVPAIFKGTGWAGKNG
Ga0228702_10194232	F007469	AGGAGG	MGELQIIDGSGLTATFTDDGVVVEPSTEHCELCNDDRLLHEGDLLRCYSCHAINRIPYNA
Ga0228702_10194234	F002357	GGAGG	MAFNLEDYEDVATLNKWFIANYPMGRSDLSVVSFDAEKGFILIQATLWRDSKDSAPAVSNLAFGSRETYIPNMKKFYVEDTATSALGRAIIILKGSDKTATKDDMKKVEVNPTFKEKLEAKQNLYGKSGRSAAIETALRASFEADKEPAPVAWSVGDVVDQIGSSTPNEPPACEHGHILKNGVSKGGKPYYGYVCKSKQCDPKWAKLTANGKWYFEGGE