Scaffold Ga0228702_1016849

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228702_1016849

Scaffold Ga0228702_1016849

Overview

Basic Information
Taxon OID	3300022748 Open in IMG/M
Scaffold ID	Ga0228702_1016849 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2540
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9266	Long. (^o)	-83.4611	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F061672	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228702_10168494	F061672	GGA	MKNCEAEEWTRRFKEKASTLGYNKAFAWWQGVLRDLERIRGESATLDLRQRMNKLKDKK
Ga0228702_10168495	F001629	AGGA	MNLNQGKVADGLVNEMLDLLHKYDETLYMATVIGCLELVKQQLIVESMEDEDE

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