Scaffold Ga0228702_1015930

Overview

Basic Information

• Taxon OID: 3300022748
• Scaffold ID: Ga0228702_1015930
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2649
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F003690	Metagenome / Metatranscriptome	473	Y
F004840	Metagenome / Metatranscriptome	421	Y
F005531	Metagenome / Metatranscriptome	397	Y
F074868	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228702_101593010	F003690	GAGG	MIPNGLELQLNDYGLELDSFLGAIYLPWHTIIITALLVTAYKIYKRKKNK
Ga0228702_101593011	F005531	AGGAG	MTITYSLWQGSQLLSVNNKANKPEEILAVIDELNKLGKGFSFIVREVEVNK
Ga0228702_10159302	F004840	AGGA	MYKITVAYDENAPHWSKPFNDEMEAWKDFFSFSDWGMANEYSTVNLFTPSGKCYTKVFYREGRKVVTK
Ga0228702_10159305	F001562	GGA	MEKTQYEKDAEIKESFIDLLNDVYPTVKIGYSTFTPAEILENCDPVAFAIGLVEHEDYLAEMEDES
Ga0228702_10159309	F074868	AGGTGG	MTTLTNIGQVLRISGKLENRILHDWNNGGAKSTYGLTTRQRKVLLLILINENPKCYCVEC