NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228702_1009479

Scaffold Ga0228702_1009479


Overview

Basic Information
Taxon OID3300022748 Open in IMG/M
Scaffold IDGa0228702_1009479 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3924
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F007691Metagenome / Metatranscriptome346Y
F011484Metagenome290Y
F018135Metagenome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0228702_100947910F001477GGAMSNIYTIHPPKSDLVLFYEVIEPDGANTWGGASAEHCIEWLSLAPTGSRILVSAWDSDEEDAHLVGQTIDITEIVRAASL
Ga0228702_100947911F003863GAGMKEVSGKQAIEYRNYRRARDRALIRLSHLYADEYRRLLVEERELDEQAGKKWVGIPDNTRITITTHTRANAVPDVAGRTDYESADEGYDGGEA
Ga0228702_10094792F018135GAGGMTVERVRHSGAYVISDFIGEGAREYLFTRTYYGYTLKQAKQLFKIALAEEGE
Ga0228702_10094793F007691GAGGMETINQLINEIYEDNYSHLEFDDNMGGECDCHIHTTLNTIVKYWNEGEVK
Ga0228702_10094794F011484GGAGMKDLEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQIRRLLNLPQLLRERAS
Ga0228702_10094797F003212GGAGMKDKWLVTIEIDTYDGDPKSWDWGTLLGYEDKVTVISSDYKGRVLPTTEGENE
Ga0228702_10094799F000821GGAGGMNNEYLKAKFDLCIDQAERDLQEQDVANAIKNLQRANRAMARLFGLEEEGENE
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