Scaffold Ga0228702_1007463

Overview

Basic Information

• Taxon OID: 3300022748
• Scaffold ID: Ga0228702_1007463
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4678
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015354	Metagenome / Metatranscriptome	255	Y
F023295	Metagenome / Metatranscriptome	210	Y
F035672	Metagenome / Metatranscriptome	171	Y
F048257	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228702_100746310	F048257	N/A	MTDFPSSVAARKCLRGEGCADSLYWLLRRTLLINGGLRLAGEKKDLWKKSFYGAVAVQGFVMAWTASHMDESVASLPSGETAIGGNAFEILGTYLTRSAIVGAGLWAGGDRKNLVRNALISTAMIQLTVLMWAQEKQQS
Ga0228702_10074635	F035672	N/A	MMHNFHDTIRDLGIGVGGPAGGLFIANVVPDPVIANISVTLGSLAALTVIIKNILDILKNNK
Ga0228702_10074636	F015354	N/A	MNPNLASLIRHGLTAAGGFLVAKGLASADQIGELAGALVTVIGVVLSVLKNKKAPTSPTPPAA
Ga0228702_10074637	F023295	N/A	VKRLRQLSDKAKLLLISKRSLMLLSMLQGLGCQTRVILVPDGQPVMLAEPVRAKVYAFDSTGNLVPSSNRVLLPAGWYALPRKK