NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228702_1006491

Scaffold Ga0228702_1006491


Overview

Basic Information
Taxon OID3300022748 Open in IMG/M
Scaffold IDGa0228702_1006491 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5182
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000645Metagenome / Metatranscriptome962Y
F005585Metagenome / Metatranscriptome395Y
F005878Metagenome / Metatranscriptome387Y

Sequences

Protein IDFamilyRBSSequence
Ga0228702_10064913F005878N/AMTGDAHPFKCGPCKKVTVHTYVTEYDSEINEGEKVWLMECQNCFEQRLFDPVDRVINREDEIGRCDQCGNYKMKAAKCRICRIASGQERIKERYWNGNATLERFIDADI
Ga0228702_10064914F000645GGAGMSNYLEDYVSVQDRLKEFINAYPDYRIKTHVLEESLTPNCDVYIVKCELYRTEADAAAWTTGLSSETKSKQYALELAETGSLGRALNLAGYFAKPSNTPKKPIQTTKPELAQFVKEQRPNDPEPIVWDVSAIAEEFGAEVVDEIPICNHGPMILKQGNKEGKEYRGWVCTERNKSAQCPARWMKIGSDGKWAFQR
Ga0228702_10064915F005585AGGGGGMATRGTIYYAFTKSRSCSVFSCETHLTWRLFLSRPNSAEWWNLQSAKIRISISLDIPESYLSADSVHQKIGTTLSLTRNHNQHQWCDYCKMRWGQLKDGTWHLRAQVPAVWKVQSETPHRRMQVRFYCQQCADEAQNWPDGTFWTLKEQLQAAIDDFAGREQLNVKLS
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