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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022748 Open in IMG/M |
| Scaffold ID | Ga0228702_1002575 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10246 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (8.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9266 | Long. (o) | -83.4611 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003267 | Metagenome / Metatranscriptome | 496 | N |
| F018160 | Metagenome / Metatranscriptome | 236 | N |
| F020667 | Metagenome | 222 | Y |
| F024098 | Metagenome | 207 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0228702_10025751 | F003267 | N/A | GGGQWQLILNQHMMALCNYGLIEQLDEIRVGIVGPPEQRKAVKEILDNSLIKDKVKVVVTRTNAWEQATLTEMYRASQDEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERCLAELENVDAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRKLGEPIREHRWQAEHWIGKAEGMTVYNSCKGWPAPDKFIITF |
| Ga0228702_10025755 | F018160 | GGTGG | MANKDVLKFDAIFAMKAVEFLNYAMLIHDILEAERMEAERMRRR |
| Ga0228702_10025757 | F024098 | N/A | MATTVLSGSPQAATPVYNKMLFKVSGSLTSGANYRYVCDVKNAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLMAPTVPTLTQAGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNVAFAGNLEQLELADWSGGVYFPDFITDGVSKALTTPTTRTVYGTDYGFLCMGLSGQPWDRVQVTYPTRTFTVALPASVSGSIARFGAGPMNLKALTSGQCSDSQAGSVGFPTADGSSYTIAFEDSFAGNFSVYYTYTIGPCQRFNSQPVHFVNKYGGIDSYTFTLKNRKRANVQRDTFGYNTDVYGTLTYDKVWAGSFDYVYALNSDWLTDAESEWLIELVRSGQVWLELDGQLVEAVVNANSYQFVTRRNDQLQQLQLEVAIAYKNNIL |
| Ga0228702_10025758 | F020667 | N/A | MSVTLIAYPLNDSNTEVPYVLDTMGGTDVAITYSISDIEDVTKRRGSFSKTITLPNTPTNERCFGFAYNIQSFVGGFTPNKKIRAAMWEDGVQVFSGVLQLLSMAKTRGKVTYEVGLFTDDVGLYQAIEGNLLVNTAGVTGMNHTPTSGHVSGTWTASGSASSGYVYGVVDAAGFSDLTQGQVIAGWWQLGPSIYVKKMIDLIFTEAGYRYSSNFFNSATFGKLVMPYAAGTMPVNLSGSNVFAQATGTITALSGTNTTMQFQKDTPAPFYDRAGYWVASSSTFVAPTALPTLWNVNLSVKIGSVSGYSILAANFELYDTSTSTVLASLGGTTGVRSAPNTTIGLQFSNVTIPAGSSVQLRTRPTIIGGFGPSAFAMLSGSTVQWTCLQNPTSIGVLDMRTALPADVKQSDLLQDLQKMFNLHIMADSQDPKLLYIEPWVDFYASGAVDWSQKADENEEQILTNGDPNASTNLIFKYKDMGDYLSKTYKQCYPLAREGYGGKLFPTQNFYGKGDKVVETACGTLIPASFASDKILGRTWDLEGTQQSGTIKPLQTGYRLAQYNLIANQTPWLYWYGIDNSDGSALIVSQTNLPFISHIDNPYAPTFDLAFEIPRLVYYNAVNASGSTITYTNNNLFNKYWKNYVNETVSKEALQLELTMMLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLADFVPVTDVPIANDPAFLYNGPITSDPTDPNYEAPTNPVNPEPGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |