Basic Information | |
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Taxon OID | 3300022748 Open in IMG/M |
Scaffold ID | Ga0228702_1001721 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13466 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (60.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.9266 | Long. (o) | -83.4611 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001805 | Metagenome / Metatranscriptome | 631 | Y |
F008811 | Metagenome / Metatranscriptome | 327 | N |
F012447 | Metagenome | 280 | Y |
F013987 | Metagenome | 266 | Y |
F018353 | Metagenome | 235 | N |
Protein ID | Family | RBS | Sequence |
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Ga0228702_100172112 | F012447 | GAG | MAKAISLIPVDKDYKSLLRAFGKMDDIAKNDMKKIAQDLAERGAAYAQGSASRAPYNPKQAVAVAGSIKVSKSDKAPSFSIGGRNKVGASAFSAGYVIMGSEFGSKQYKQFPKRSPSQGRGNRGWWLYPAMSRFQPTIAREWLAGYEKVRDAWAGRI |
Ga0228702_100172114 | F008811 | AGGA | MATTILSGRQVKVTIGAVEYSEQILSSALNFATERLTFDTLAGKAFKYIDSNVTLDLTFLNDSGETVSLYKALWNATESAPDTALTFIFLTQTGVSFTGTVLPVYPGISASGADAQQCSVSLQVVGIPTEDLTK |
Ga0228702_100172120 | F013987 | AGG | MGLREEKQRILPALDKATEEAQRQGFITELDLAGIAALFTIAGVLDSGMLKPMEEIKYLSQLQSGLDKYGLSLFGRKEKPELEVGDDPLYALRELNVKALDIDLGKLDPSTSNHTTTTPN |
Ga0228702_10017215 | F018353 | N/A | MSKPKAKKQTIELPDVMASELVRVINTAHEDGKLITGFVAILEVFDGKKKTIKIQANADMPQHSIFGIINFAAEKYQFTISPDEDDDDDFYDPNWYDGQ |
Ga0228702_10017218 | F001805 | N/A | MVGIDNEVIELTGADKEAFLADRKATADAQALLEAEYKAKQEARENAIKKLAEVAGLTKEELASIL |
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