NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228702_1001721

Scaffold Ga0228702_1001721


Overview

Basic Information
Taxon OID3300022748 Open in IMG/M
Scaffold IDGa0228702_1001721 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13466
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001805Metagenome / Metatranscriptome631Y
F008811Metagenome / Metatranscriptome327N
F012447Metagenome280Y
F013987Metagenome266Y
F018353Metagenome235N

Sequences

Protein IDFamilyRBSSequence
Ga0228702_100172112F012447GAGMAKAISLIPVDKDYKSLLRAFGKMDDIAKNDMKKIAQDLAERGAAYAQGSASRAPYNPKQAVAVAGSIKVSKSDKAPSFSIGGRNKVGASAFSAGYVIMGSEFGSKQYKQFPKRSPSQGRGNRGWWLYPAMSRFQPTIAREWLAGYEKVRDAWAGRI
Ga0228702_100172114F008811AGGAMATTILSGRQVKVTIGAVEYSEQILSSALNFATERLTFDTLAGKAFKYIDSNVTLDLTFLNDSGETVSLYKALWNATESAPDTALTFIFLTQTGVSFTGTVLPVYPGISASGADAQQCSVSLQVVGIPTEDLTK
Ga0228702_100172120F013987AGGMGLREEKQRILPALDKATEEAQRQGFITELDLAGIAALFTIAGVLDSGMLKPMEEIKYLSQLQSGLDKYGLSLFGRKEKPELEVGDDPLYALRELNVKALDIDLGKLDPSTSNHTTTTPN
Ga0228702_10017215F018353N/AMSKPKAKKQTIELPDVMASELVRVINTAHEDGKLITGFVAILEVFDGKKKTIKIQANADMPQHSIFGIINFAAEKYQFTISPDEDDDDDFYDPNWYDGQ
Ga0228702_10017218F001805N/AMVGIDNEVIELTGADKEAFLADRKATADAQALLEAEYKAKQEARENAIKKLAEVAGLTKEELASIL
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