Scaffold Ga0228702

Basic Information
Taxon OID	3300022748 Open in IMG/M
Scaffold ID	Ga0228702_1000987 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022748 Open in IMG/M

Scaffold ID

Ga0228702_1000987 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19569
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (57.69%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

19569

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (57.69%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9266	Long. (^o)	-83.4611	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9266

Long. (^o)

-83.4611

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007911	Metagenome / Metatranscriptome	342	N
F015449	Metagenome / Metatranscriptome	254	Y
F024499	Metagenome / Metatranscriptome	205	N
F041639	Metagenome	159	N
F043284	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228702_100098713	F024499	N/A	MSEFTECLKESLAALYTQTGTAATIGSTSVTGILSTISRKENVELGGFDLDLNSTFTIDVANMATAPTIGSIITVNSIGYRVASLDTSIGSYVLGLREV
Ga0228702_100098723	F041639	N/A	MGRPKNTAIHAQAAAAGVGLRQARRQLEKQAAANPPKALEAIDGVGLDGEIDRLESLAATLGEAAKQATGPERSALISDYTRVVEALRKMKGDRPDINEAEGKMVPVDEADKLLAARDNALIPLLKGMAKRLAPICANRPAAEVQAEVENEVGQIMRQVEAAL
Ga0228702_100098724	F043284	AGG	MKLKAIVTKLNDTRDKALELVGKTIGLAAEAGTIIQQARTDGEDVRDLCEQAGITEEVGRRYEKVAAAQHKITSGQADAGEMRQTYLRIGMLPDPITASVPADPKPFLWPVIKACQWLGNRGSKYISQDAELREQFIREAEPIVRAYNELKGAE
Ga0228702_10009877	F015449	GAG	MIESFWGTTNIKVAAAAAAYGAKLRPMDPVTRIVKEDGREQVTFWFTDGGEGQEAKAEMERTWAEMKSPEDASIRFVRAALENRETLLGLVKRAEKILSIQRGGQTLLVAEKARPELKKALLSRL
Ga0228702_10009879	F007911	N/A	MLDRLIEGAFQELLSATVTGQDYHLSHDLTENKPPSIVIKATMGTEEPVQGSGVFSVPVEIILEQSYDDTTLAAHTQKCSKILQAFYDTTSLTARLNATTAIGAARCYNAKLESSEAEADNEERSMKRNFKLAVIAYPNSVAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0228702_1000987

Overview

Ecosystem & Geography

Associated Families

Sequences