 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022748 Open in IMG/M |
| Scaffold ID | Ga0228702_1000451 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31957 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (13.21%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9266 | Long. (o) | -83.4611 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000557 | Metagenome / Metatranscriptome | 1026 | N |
| F003267 | Metagenome / Metatranscriptome | 496 | N |
| F020667 | Metagenome | 222 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0228702_10004511 | F003267 | N/A | IHYYHIYCGGGGQWQLILNQHMMALCNYGLIEKLDEIRVGIVGPPEQRKAVKEILDNSLIKDKVKVVVTRTNAYEQATLTEMYKASQDEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERCLAELEKVDAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFIITF |
| Ga0228702_10004514 | F000557 | N/A | MKLQDLTIDQFQRIAALELSPALNDADKRLGVVAIVEGVDVAIVRDMPATSLTKRYKEIIKEWNELPALAYKRKFKAGGKWWIPTMFTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREAAWFGWFAKKYDGASHAERAELMKKHAKIGDVWGVVSFFLLSSEAYLQILSDYSKHLTKKAQDQ |
| Ga0228702_100045152 | F003267 | N/A | MKLIHYYHIYCGGGGQWQLILNQHMMALCNYGLIEKLDEIRVGIVGPPEQRKAVKEILDNSLIKDKVKVVVTRTNAWEQATLTEMYKASQTEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERCLAELEKVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFIITF |
| Ga0228702_10004518 | F020667 | N/A | MSVTLIAYPLNDSNVEVPYVLDTMGGTDVAITYSISDIEDVTKRRGSFSKTITLPNTPTNEKCFGFAYNIQSFVGGFTPNKKIRAAMWEDGVQVFSGVLQLLSMAKTRGKVTYEVGLFTDDVGLYQAIEGNLLVNTAGVTGMNHTPTSGHVSGTWTTSGAASSGYVYGVIDAAGFTDVYSQGGGVLLAGWWQLGPSIYVKKMVDLIFAEAGYRYSSNFFNSATFGKLVLPYAAGTMPVNLSGSNIFAQSTGTVTALSGTNTVLLFPKDTPAPFYDNSGYWVASSSTFVAPTELPTLWNVNLSLKIGNVSGYSILAAIFDVYDTITSSVITSLGGTTGVRSAPNTTIALNFNNLTIPAGSAVQLRTHPVIIGGNGPSAFALLSGSTMQWTCLQNATSIGTLDMRTALPADVKQGDLLQDLQKMFNLHIMADAQDPKLLYIEPWVDFYASGVVDWSQKADENAEQILTNGDPNASTNLIFKYKDMSDYLSKTYKQSYPLAREGYGGKLFPTQNFYGKGDKVVETSCGTLIPASFASDKVVGRTWDIDGTIASGTIKPLQTGYRIAQYNLVANQTPWLYWYGINNADGSALIVSQNNLPFVSHIDNPYSPTFDLAFEIPRLVYYNAVNASGSTINYTNNNLFNKYWKNYVNETVSKEALQLELTMMLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLAEFAPVTDVPIANDPAFLYNGPITSDPSDPNYEPPVNPELPQPGE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |