Scaffold Ga0228702_1000396

Overview

Basic Information

• Taxon OID: 3300022748
• Scaffold ID: Ga0228702_1000396
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34620
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (88.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F005737	Metagenome	391	Y
F011282	Metagenome	292	Y
F031035	Metagenome	183	Y
F041736	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228702_10003962	F005737	GGAGG	MFDIEHYKKPTNWERIALWAVSLTALCVVLLDLFVWRA
Ga0228702_100039620	F000961	GAG	MEIDPVKYGTLWQKVEDYERRFDALDKKIDRLEDQVDRLVALANQGRGGFWAGMAFVSLISSAVGFLIAWIKR
Ga0228702_100039645	F031035	GGA	MEKELIQLRIQDLIAKGKELETQIHQINGALQQCQWMLTEIEKKEQENAAN
Ga0228702_100039653	F041736	AGGAG	MILKSLSMRFVMLSMMDVEDHWRNSKWKDTGDLINPDKPMIIQVGDYGYEVQSCGGDGDIEGFVIMCKEEPVCKWEGMECIKL
Ga0228702_100039656	F011282	N/A	MQRFKNIVVVTGVYKNRSGEEKKRYQTIGSVFVDDNENLKIKLDTIPLIEGGWSGWANCYDLEKKEKTDSEDFPF