NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228703_1021989

Scaffold Ga0228703_1021989


Overview

Basic Information
Taxon OID3300022747 Open in IMG/M
Scaffold IDGa0228703_1021989 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2034
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007970Metagenome / Metatranscriptome341Y
F057312Metagenome / Metatranscriptome136Y
F097192Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0228703_10219892F007970GGAGGMKEWLTMCGIVFVVSYVCAFSDEPTPSRVADLATLAARVSELERRVEALEAPAVAESAAVAESLPVLEIHSETWCGPCQTLKADLAALGETGVEVRWVRFSDRVPAMRWTGADGNPVTVTGYTRGTVAGLLERVRAAHVARLGKTE
Ga0228703_10219893F097192GAGMADAEQQHNDDDGGEVVHFTMPGLSIRITNRTLETVGKYTGKSWMAVVFALAGAIIIYALNGFVRGGM
Ga0228703_10219894F057312AGGGGGMVAVYDWLHRTWSSLVLVADMSEPSGEMETEPPAPGCEIFTDALDQLMLEYEEICKRLDFNLDRLWECQQAKAQAAFGGIDANRANMTKQSISGAKLILRTAANRVNQVIGEIEIVSTPPQQQAVTNGD
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