Scaffold Ga0228701_1007398

Overview

Basic Information

• Taxon OID: 3300022746
• Scaffold ID: Ga0228701_1007398
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4691
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002515	Metagenome / Metatranscriptome	552	Y
F003965	Metagenome / Metatranscriptome	459	Y
F014849	Metagenome / Metatranscriptome	259	Y
F024319	Metagenome / Metatranscriptome	206	Y
F039631	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228701_100739812	F000447	AGGCGG	MGYIEIFRLDEQGAGWIDLSDATPQELLDIEIGLFQEGAI
Ga0228701_100739816	F003965	AGGTGG	MTTLTINNVCKEHTPMKSAISEVSDTQYTFCMECENNIERWYNDTDPERLPMWTDWKVSK
Ga0228701_100739817	F024319	AGG	MTNRIWESLNDYQIELDAERLGYVACSAGCGRVTAWSLCVMCGGNYAEHNLLGKVVK
Ga0228701_100739818	F039631	AGG	MNTLDKNKIKSAKYGHLTLDERIQVAAQMMADGHLISFRGASAETYKKVQALANRIKLEREFPQCPCEECL
Ga0228701_10073982	F002515	N/A	MKKTSEELRRLMELRRSNAASAVQSKKAYNRKKCQSELLQYKYQQKGE
Ga0228701_10073989	F014849	AGGAGG	MLTNLDLIAIIIALGGSVTVMCLFWKQNIELTKHNRFLRNRIKELQK