NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228701_1005300

Scaffold Ga0228701_1005300


Overview

Basic Information
Taxon OID3300022746 Open in IMG/M
Scaffold IDGa0228701_1005300 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6053
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (55.56%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010463Metagenome303N
F014488Metagenome262Y
F023585Metagenome209Y
F023833Metagenome208Y
F024265Metagenome206N
F033350Metagenome177N

Sequences

Protein IDFamilyRBSSequence
Ga0228701_10053001F014488N/AMNHQGQDPADSILASYTPDMAEHIDTLEDRVKERLAKMQAMNPSIDLNQLAKLTAEIVEQTIKHEGDSQMLRHKRDDTLDEALLALATNRSPDSLTSIAKRYINPSTGKHYTRAAISARLSELTQRTGLVLRIQRSERVRQIYKERALRVHKKRREECP
Ga0228701_100530010F023585AGGAMSVKRLSLLDEFHAVISGRLKVLFKRLSHAEVENFRDIINNLDYSHRITKELLERAKQYQKRDKEAKK
Ga0228701_100530012F033350AGGAGMPTDVQIPETKWSMLVWRTTKELPHNDEKVLMDIGGEVAVGRFVDGSFVSRSWGHSENDVRLWASWPLAPKW
Ga0228701_100530013F023833AGGAMKSHSEQIQDILKEATSKAAFLERERCAELVQQLADGTEDQVITGILNEVVTAIRRLPDA
Ga0228701_10053003F024265N/AMNESYVTAEAKAKGILSDRYPGKELEKLYATTRNQATIDMLRDAVLTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED
Ga0228701_10053007F010463N/AMITQPQELVLAATIHRVKLCEDKIREFEQMVSTLTSQMAQNRTELASKGLASLVMGTTTPLDIPKELVPTYGKYRARGNRSHSIVKKRWELWKAQHDSGLSIQEIAKAWGCHHTSILNAKNRNFTPRKATGRGKK
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