Scaffold Ga0228701_1004408

Overview

Basic Information

• Taxon OID: 3300022746
• Scaffold ID: Ga0228701_1004408
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6962
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007691	Metagenome / Metatranscriptome	346	Y
F008305	Metagenome / Metatranscriptome	335	Y
F034575	Metagenome / Metatranscriptome	174	N
F035304	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228701_100440811	F008305	GAGG	MLGYTYEDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYIN
Ga0228701_100440812	F007691	N/A	MTQTINDLINEIYEDNFSHLEFEENMGGIDCDCHIHITLNTIARYAGIEVG
Ga0228701_10044087	F034575	AGCAGG	MTLDPYLMKQVEMGMDGADILHGHLKTLMLEAEQILDRCIEVEEETEEAMDSMARTEATGYLDALSHVYALTYAIAFAKEDVKNRREILGE
Ga0228701_10044088	F035304	N/A	MDLNTFKEYIRLHAISLEQDLENEDGADSIVPYLEGAIHVSRHYLEVAGE