NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228701_1004408

Scaffold Ga0228701_1004408


Overview

Basic Information
Taxon OID3300022746 Open in IMG/M
Scaffold IDGa0228701_1004408 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6962
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007691Metagenome / Metatranscriptome346Y
F008305Metagenome / Metatranscriptome335Y
F034575Metagenome / Metatranscriptome174N
F035304Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0228701_100440811F008305GAGGMLGYTYEDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYIN
Ga0228701_100440812F007691N/AMTQTINDLINEIYEDNFSHLEFEENMGGIDCDCHIHITLNTIARYAGIEVG
Ga0228701_10044087F034575AGCAGGMTLDPYLMKQVEMGMDGADILHGHLKTLMLEAEQILDRCIEVEEETEEAMDSMARTEATGYLDALSHVYALTYAIAFAKEDVKNRREILGE
Ga0228701_10044088F035304N/AMDLNTFKEYIRLHAISLEQDLENEDGADSIVPYLEGAIHVSRHYLEVAGE

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