Basic Information | |
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Taxon OID | 3300022746 Open in IMG/M |
Scaffold ID | Ga0228701_1004408 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6962 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.9255 | Long. (o) | -83.5226 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007691 | Metagenome / Metatranscriptome | 346 | Y |
F008305 | Metagenome / Metatranscriptome | 335 | Y |
F034575 | Metagenome / Metatranscriptome | 174 | N |
F035304 | Metagenome / Metatranscriptome | 172 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0228701_100440811 | F008305 | GAGG | MLGYTYEDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYIN |
Ga0228701_100440812 | F007691 | N/A | MTQTINDLINEIYEDNFSHLEFEENMGGIDCDCHIHITLNTIARYAGIEVG |
Ga0228701_10044087 | F034575 | AGCAGG | MTLDPYLMKQVEMGMDGADILHGHLKTLMLEAEQILDRCIEVEEETEEAMDSMARTEATGYLDALSHVYALTYAIAFAKEDVKNRREILGE |
Ga0228701_10044088 | F035304 | N/A | MDLNTFKEYIRLHAISLEQDLENEDGADSIVPYLEGAIHVSRHYLEVAGE |
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