Scaffold Ga0228701_1004084

Overview

Basic Information

• Taxon OID: 3300022746
• Scaffold ID: Ga0228701_1004084
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7392
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (35.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014486	Metagenome / Metatranscriptome	262	Y
F037078	Metagenome / Metatranscriptome	168	N
F043789	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228701_100408419	F037078	AGG	MKNQITITTQPFGNTTAFLLEGSKSQIENFHNAMYNYSATNGELHDMGNGKAFYFYAQPEAVLEAMTKVALYALCNKIKAKGLKGGLLNLAKQKAQAKFDNFKEGRFLRTAISTDVFNLGSITAEKPSDYCGAISNGRD
Ga0228701_100408420	F043789	N/A	MKKKLSKYEQLIANLDKAAQDLKNASAHAVATLDAHAKKIEEINQKYSTSETK
Ga0228701_10040846	F014486	N/A	MNIEKLLNENLETFYPWSDNDNPPLDTNKTFVQKLREIDEEFEGWRASM