NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228701_1003440

Scaffold Ga0228701_1003440


Overview

Basic Information
Taxon OID3300022746 Open in IMG/M
Scaffold IDGa0228701_1003440 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8399
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (44.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F010746Metagenome / Metatranscriptome299Y
F020860Metagenome / Metatranscriptome221N
F022820Metagenome / Metatranscriptome212Y
F035200Metagenome / Metatranscriptome172Y
F048090Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0228701_10034401F048090N/AMTNEITSLATETCEEVYADANAFFDYINSNDVVNSMLDALSGVYDSSETIVEVK
Ga0228701_100344012F022820N/AMKYENRISKILEKRILKDEDPKLISKIDKYLADLEVVFVKWAKAHPNWKETEE
Ga0228701_100344015F007359AGGAMKLIKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSNDFAYFWITLEKLERVMFKYVMNSLSDKLGKKFIGTKGGLKAVVMNRVMNTINNIPSEHFVKTAQVQDFYSIGQVSAEKLDNDS
Ga0228701_100344020F035200GGAGGMNSKFIVLRDGVRVSDDMHSSETSAEVEANYWREIIKRWPDGTKVIVKKIGG
Ga0228701_100344021F010746AGCAGMTYKCAVSGEALSPERVEALQVLGVPETLWTKKEYSQTRKLKAVYAGDDGSNDIIICDNVDGGSMFDNSIVAEVENE
Ga0228701_100344023F020860N/AMEITKAKKLKEGGYALYATDSKTKQETQVGYIGEGLTLEAWLPKGVKIENS
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Institute for Fundamental Biomedical Research
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