Scaffold Ga0228701

Basic Information
Taxon OID	3300022746 Open in IMG/M
Scaffold ID	Ga0228701_1002516 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022746 Open in IMG/M

Scaffold ID

Ga0228701_1002516 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10716
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (87.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10716

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (87.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9255	Long. (^o)	-83.5226	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9255

Long. (^o)

-83.5226

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018682	Metagenome / Metatranscriptome	233	Y
F028428	Metagenome / Metatranscriptome	191	N
F031789	Metagenome	181	N
F037549	Metagenome / Metatranscriptome	167	N
F042903	Metagenome	157	Y
F088161	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228701_100251611	F028428	GAGG	MSYGKSEYPVTPGKTILFSKDPSQKKNPNSPDWDGDLVLTRSYTEGQTLKLSIWKSMAKNGKEYFTVKENTYFKDKELADNVPKEVPAQYKPYGGTFKKNVDDDSDVPF
Ga0228701_100251620	F031789	GAGG	MAINGAFYPMGRTFVLSGTTTNQSANIYADSPSGQYLFVNHEVASTGQPVYVRISATSGNNAAVANATSGNYGVPIRPAESLVLSGPQCSSTSNVFITFITATGTANVYVTPGEGMR
Ga0228701_100251621	F018682	AGGAG	MKSRLHQRDHDFNQQIAKSVRPQLPRDGSRDMIRWEPGQLPKGGFRSIIPFCEGEYNTKHSPTSGGGKRIY
Ga0228701_10025164	F042903	AGGAG	MVAKLPYTFTICPDQEAPKSFTASCEEMGRLIMNSPDGDLTINQKRIATWDSWSGNHMGFIEEKLQEMFQKIKEKNDE
Ga0228701_10025165	F037549	AGGAG	MNDYQLMQIWRGIKFPQKEVEQRVLEFGKQVMHESSDHYYQLGRQEAFQAMKPVLLKALSALDSAHYILMIQPVTPREEALAVDDAIKHLNSILEVL
Ga0228701_10025167	F088161	AGG	MKLCIHCKHLLPRDGDPDYSLAKCGAFFTLHPVSGAKLYTYAFNQRTFQDGKCGMPAAFFEPLEGHNDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0228701_1002516

Overview

Ecosystem & Geography

Associated Families

Sequences