Scaffold Ga0228701_1002482

Overview

Basic Information

• Taxon OID: 3300022746
• Scaffold ID: Ga0228701_1002482
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10839
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F012108	Metagenome / Metatranscriptome	283	Y
F012658	Metagenome / Metatranscriptome	278	Y
F057320	Metagenome / Metatranscriptome	136	Y
F064189	Metagenome	129	Y
F104766	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228701_10024822	F012658	AGGA	MNSLSKIFAAMTAGKYVGIIDPKGNAHCGLVNGIMREDGSGKNWIVTVTNLNGSEKVFIRAS
Ga0228701_100248220	F104766	GGAG	MEWISFFEKQPEHGQRIWYYGEYIGVWAGEYSYCENDPYSPHLIYCHEAPGVVDRMDAPWWMPDDGMMSRPIKPTKDYPEDYPNG
Ga0228701_100248221	F064189	GGAGG	MAKNFRDLNTTEACNMNREQAMIYLINFFNSRMSAMSKNNVDKAKELVGLHEISTSELVNKYIELVLSNS
Ga0228701_100248224	F012108	N/A	MIKVELSVRESLSMIANGCSFDMFEKIVCAFEAALGQGRNMTITGGMSTNNRIPCIKAIRLNTGWGLKEAKEWTDALIGHYGSYDQWVPGKGKNTMTLKTPEAAKNLLRELTALGCVGFL
Ga0228701_100248225	F006543	GGAGG	MKKFSFAVDIVADELDRDSVVDSITECLSGSLAGDVHANVKAGEVKSFSEQGYKVWRARVTGVTAEKAGDAHNGKVEKETVGA
Ga0228701_100248227	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVVTEKNKIRAMILDAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMRIAPKRPKNKAKADAWRKALPKLVILNGTKFVTCPEIRRGRTEITCTGTKDSISCDLCVRGLANVLFPAH
Ga0228701_100248228	F057320	N/A	LKGVGMSYVGLYDDAGSKNAFYMVTKKIGRKRVGFKEFENKREAEFAHRIQKHLAQYNLAPMVYGDVGYIRKYNHDSDEFTAYGYLTEVARLMPQCYDDDCDGECFQTDCKNGLAIQYVVNTLDSLGLSYADGHRGNFGYVRRNGVWIPVVIDVGVEGFTDWDTSIYGDFVEESECDCLQCRKA