Scaffold Ga0228701_1002423

Overview

Basic Information

• Taxon OID: 3300022746
• Scaffold ID: Ga0228701_1002423
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11086
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023293	Metagenome	210	Y
F032573	Metagenome	179	Y
F042903	Metagenome	157	Y
F043751	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228701_100242310	F042903	AGGAG	MVAKLPYTFTICPDQEVPKSFTASCKEMGRLVMNSPDGDLTINQKRIATWDAWSGNHMGFIEEKLQEMFQKLREKNCG
Ga0228701_100242313	F023293	AGG	MKYGILDDEGQVVRWVWTVPPYPHIVQKIKRKRKPKLNLSNVPEALF
Ga0228701_10024232	F032573	AGGAG	MKNKMSEAWREWWSIVHGKNTPVGSYNPLEAHMYEAWMAAWDAADKQSQTEINHLKEQLMRANTNDGAYKAAFLAGQMAARGGSWK
Ga0228701_10024235	F043751	GGGGG	MRRCWPKKMYYVMCRWVAVKNGSRNYVRTPSLGRARYYAKRLRLKERQIDVWEKGKKKYVLQGSWL