Scaffold Ga0228701

Basic Information
Taxon OID	3300022746 Open in IMG/M
Scaffold ID	Ga0228701_1000972 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022746 Open in IMG/M

Scaffold ID

Ga0228701_1000972 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20892
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (79.17%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

20892

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (79.17%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9255	Long. (^o)	-83.5226	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9255

Long. (^o)

-83.5226

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002997	Metagenome / Metatranscriptome	514	Y
F014737	Metagenome / Metatranscriptome	260	Y
F022651	Metagenome / Metatranscriptome	213	Y
F023109	Metagenome / Metatranscriptome	211	Y
F024113	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228701_100097210	F002997	N/A	MTIARFENITINNLAFGKSDFGEQSTTQTVWFGTRARVADVANSVKIADRYRLYQDLVNFTLNYTPNMKTIVDNQQSYSITWRGNDWRITDVRESNDRMRVTLMCYRSDPVTAV
Ga0228701_100097214	F022651	N/A	MTKDDKKSSLDLLHFLLLQSSERKDWFSFSTQRITAVALSHEIAAKHADKLTPTEAVDYAVELNQEIYNKIINNRK
Ga0228701_100097220	F014737	GGAG	MTAMSALNGPQIRQAEFVRLTVGKAETVYTFCNAAAPITVDGISFTNLGILLSVGDVQRDMRATSDDMTISLTGINPEAVSIILSSDIKGSLVEIWRGFFDDNNQIITSPTTQFFKRYQGIINSVSISEDFNTQARTRVATCSIACSSMRRVLENRLSGVKTNQSSWQFFYPGDISMNRVSTIANTYFDFGKPPQTDTQATDTTTSYDGSMAATGENIPGTYGY
Ga0228701_100097221	F023109	GGA	MIRLATRYDIPRLLEIVESYAYENPIQVLAQPHNHFPKYVEELLFSIIAGRGFIYIDNNMRGAIIAIKQSNIWSPKVKELHELLWWVEPEHRNGTVGGRLWKAFDERATKMLEVGDIDVAITSISASGPLIDYSKRGYKPFGASFVKE
Ga0228701_100097223	F024113	GGA	MAVFNRNTLAQVSGFDNPILAGELVWDQQTYWNLSFTSNGLPVDLTGATIDAQIVRRELSNIVDTRNGLTFDIADYSPTPTAIPLTVSNINTALGTCTLVIDAGAWSLMSTDPELEINAQNPVGYSGRVKVSFPAVGSVPADDMIIFLLFIVRSDGVIVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0228701_1000972

Overview

Ecosystem & Geography

Associated Families

Sequences