Scaffold Ga0228701_1000484

Overview

Basic Information

• Taxon OID: 3300022746
• Scaffold ID: Ga0228701_1000484
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33246
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (68.42%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F009066	Metagenome	323	Y
F026867	Metagenome	196	Y
F033352	Metagenome / Metatranscriptome	177	N
F042872	Metagenome	157	Y
F048158	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228701_10004841	F048158	AGTAG	MARPVNHDVKRAMAATGKSRATVYLQRKKAEAQPLVKAKGGGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPDIDQAEGTMVPVDEADKILAARDNALIPLLKGMAKRLAPICANRPAVEVEAEVENEVGQIMRQVEAAL
Ga0228701_100048426	F006891	GAG	MSTDQVAELSERLSEVRISVARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELLKRRLSF
Ga0228701_100048430	F009066	GGAG	VTPEHEKHLAGIVRDLTKDLDAKYRKGQEEHGGALWRRPVWKDAWEEVLDLCTYVHTLKMQLSVIAEIALIGASDESVVAAQSRESCRQILAVLEGFPSAADKK
Ga0228701_100048436	F026867	N/A	MSSVRLNDSAMKLRQENRALSLRQLGAAYGLGYVRIKQMQALPGFPLLAGKVIPSDFDRWRLMQTGLSSLHRGDRLRSAVGKVHALESKNGLRVSWLQIANTLKASIESRGLPEGNENND
Ga0228701_100048438	F042872	N/A	MQSIINQIKEGNRSVGSNPTPSDAYPYNDLRRNSNTAVITGPKKAHYQQLNLNSRGGYDLTPEAFVYHPNPAVCRMWHAQHEASK
Ga0228701_100048444	F033352	N/A	MTDLTKFRLIENIEVMACRNSAERVVKALNRGEIDQAKQLARKHEIAWHLADREFQDLNQPHRNNDFCDDE
Ga0228701_100048448	F005502	AGG	MRALCNLVLTFLAFFGFPATQASNVMIDMRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGAKREWVAVDTGTAVKSKKASGGKLPVIDVFASSEKQFNAMRLPKVAMVEVIK
Ga0228701_100048453	F007747	AGGAG	MKDLGKITFGKARPAPKQVLVDVSYDARTAKALHAFGLKQLKKDQEAVIEYVIKKALEGLVKK