NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228701_1000484

Scaffold Ga0228701_1000484


Overview

Basic Information
Taxon OID3300022746 Open in IMG/M
Scaffold IDGa0228701_1000484 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33246
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (68.42%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005502Metagenome / Metatranscriptome398N
F006891Metagenome362Y
F007747Metagenome / Metatranscriptome345Y
F009066Metagenome323Y
F026867Metagenome196Y
F033352Metagenome / Metatranscriptome177N
F042872Metagenome157Y
F048158Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0228701_10004841F048158AGTAGMARPVNHDVKRAMAATGKSRATVYLQRKKAEAQPLVKAKGGGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPDIDQAEGTMVPVDEADKILAARDNALIPLLKGMAKRLAPICANRPAVEVEAEVENEVGQIMRQVEAAL
Ga0228701_100048426F006891GAGMSTDQVAELSERLSEVRISVARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELLKRRLSF
Ga0228701_100048430F009066GGAGVTPEHEKHLAGIVRDLTKDLDAKYRKGQEEHGGALWRRPVWKDAWEEVLDLCTYVHTLKMQLSVIAEIALIGASDESVVAAQSRESCRQILAVLEGFPSAADKK
Ga0228701_100048436F026867N/AMSSVRLNDSAMKLRQENRALSLRQLGAAYGLGYVRIKQMQALPGFPLLAGKVIPSDFDRWRLMQTGLSSLHRGDRLRSAVGKVHALESKNGLRVSWLQIANTLKASIESRGLPEGNENND
Ga0228701_100048438F042872N/AMQSIINQIKEGNRSVGSNPTPSDAYPYNDLRRNSNTAVITGPKKAHYQQLNLNSRGGYDLTPEAFVYHPNPAVCRMWHAQHEASK
Ga0228701_100048444F033352N/AMTDLTKFRLIENIEVMACRNSAERVVKALNRGEIDQAKQLARKHEIAWHLADREFQDLNQPHRNNDFCDDE
Ga0228701_100048448F005502AGGMRALCNLVLTFLAFFGFPATQASNVMIDMRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGAKREWVAVDTGTAVKSKKASGGKLPVIDVFASSEKQFNAMRLPKVAMVEVIK
Ga0228701_100048453F007747AGGAGMKDLGKITFGKARPAPKQVLVDVSYDARTAKALHAFGLKQLKKDQEAVIEYVIKKALEGLVKK

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