Basic Information | |
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Taxon OID | 3300022746 Open in IMG/M |
Scaffold ID | Ga0228701_1000484 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 33246 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (68.42%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.9255 | Long. (o) | -83.5226 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005502 | Metagenome / Metatranscriptome | 398 | N |
F006891 | Metagenome | 362 | Y |
F007747 | Metagenome / Metatranscriptome | 345 | Y |
F009066 | Metagenome | 323 | Y |
F026867 | Metagenome | 196 | Y |
F033352 | Metagenome / Metatranscriptome | 177 | N |
F042872 | Metagenome | 157 | Y |
F048158 | Metagenome / Metatranscriptome | 148 | N |
Protein ID | Family | RBS | Sequence |
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Ga0228701_10004841 | F048158 | AGTAG | MARPVNHDVKRAMAATGKSRATVYLQRKKAEAQPLVKAKGGGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPDIDQAEGTMVPVDEADKILAARDNALIPLLKGMAKRLAPICANRPAVEVEAEVENEVGQIMRQVEAAL |
Ga0228701_100048426 | F006891 | GAG | MSTDQVAELSERLSEVRISVARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELLKRRLSF |
Ga0228701_100048430 | F009066 | GGAG | VTPEHEKHLAGIVRDLTKDLDAKYRKGQEEHGGALWRRPVWKDAWEEVLDLCTYVHTLKMQLSVIAEIALIGASDESVVAAQSRESCRQILAVLEGFPSAADKK |
Ga0228701_100048436 | F026867 | N/A | MSSVRLNDSAMKLRQENRALSLRQLGAAYGLGYVRIKQMQALPGFPLLAGKVIPSDFDRWRLMQTGLSSLHRGDRLRSAVGKVHALESKNGLRVSWLQIANTLKASIESRGLPEGNENND |
Ga0228701_100048438 | F042872 | N/A | MQSIINQIKEGNRSVGSNPTPSDAYPYNDLRRNSNTAVITGPKKAHYQQLNLNSRGGYDLTPEAFVYHPNPAVCRMWHAQHEASK |
Ga0228701_100048444 | F033352 | N/A | MTDLTKFRLIENIEVMACRNSAERVVKALNRGEIDQAKQLARKHEIAWHLADREFQDLNQPHRNNDFCDDE |
Ga0228701_100048448 | F005502 | AGG | MRALCNLVLTFLAFFGFPATQASNVMIDMRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGAKREWVAVDTGTAVKSKKASGGKLPVIDVFASSEKQFNAMRLPKVAMVEVIK |
Ga0228701_100048453 | F007747 | AGGAG | MKDLGKITFGKARPAPKQVLVDVSYDARTAKALHAFGLKQLKKDQEAVIEYVIKKALEGLVKK |
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