NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228701_1000334

Scaffold Ga0228701_1000334


Overview

Basic Information
Taxon OID3300022746 Open in IMG/M
Scaffold IDGa0228701_1000334 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41487
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (72.97%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002085Metagenome / Metatranscriptome595Y
F024506Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0228701_100033410F024506GAGGMSLNTILSIAESVGINDQKFVGQVLSRNQRISVSELLSVQPFSFDIKPMNYLSYAKNRSVLSTLRVNDKINEQYLNFGATGWLNYIAYQGDMTSAQISACQYQTSSSGKIIVLGSLPSIASTAYIVKTGDFLQIGRYAYIATADIQRGSGSTVSIPVHRTILTTVTLSNAVIGQYGTTQALGGNTYTGITFPVLLRAYPTYTLIPMTNDSFVQWDGSFKAFEVVL
Ga0228701_10003349F002085GAGGMNPIAPVVGTNTIRMADFVRITTPTTTYLFATTPVSITVPEVDSQPFAAVGQLISIGQVQRDIKSTANETSFTLVGIDTAMLGWILGQNVKGCQIEAWHGFFDSNNQLITTGGSGGLYQFFNGYINSFAISEQWMEEARMYIGTITVNAASIQIILRNRTAGRFTNNSSWTFYTPNDTSMNRVAFAATANYYFGKDAPAGS
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