Scaffold Ga0228701_1000122

Overview

Basic Information

• Taxon OID: 3300022746
• Scaffold ID: Ga0228701_1000122
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90007
• Total Scaffold Genes: 151
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 137 (90.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003439	Metagenome / Metatranscriptome	486	Y
F006979	Metagenome / Metatranscriptome	360	Y
F096495	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228701_1000122130	F006979	N/A	MSKTFKAAGEKHTVKKNKKGEVIVNHAGNNGKYDKVNLTKKAGAKTIAQGVKATKDWHKKNG
Ga0228701_1000122151	F096495	N/A	ALLLPANPRLWNMITTQAKTKFAKYPSPAAAHWVHARYSQLGGKFVTSKKDIDPRFRDYAHEAQEAREKALKKKVTHPVGKNLTKGESFKY
Ga0228701_100012265	F003439	AGGA	MTVRKARSENAELLEGATDGKYRKRRPNTTVAPGMGDQAVVQNRAGLHPYMNYGFINSEEPVKVNPGA