NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228700_1000412

Scaffold Ga0228700_1000412


Overview

Basic Information
Taxon OID3300022744 Open in IMG/M
Scaffold IDGa0228700_1000412 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39870
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (82.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9301Long. (o)-83.5517Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F002689Metagenome / Metatranscriptome536Y
F012668Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0228700_100041244F002689AGGMATINTTEARLDTHEEVCAFRYEQVNARLKRLEGILLKTCGIMLLGMGGVIWASVIKHA
Ga0228700_100041257F002085GAGMNVITPVDGTSNIRFADFVRITTNGNVYRFTTLPYDITVPAVDSSAFSAVGVLMKVGEAQRDIKSTANETTVTLTGIDTAMLGFVLSNNIKGSQIEMWHGFFDTNDTLITSGGTGGLYKFFNGFINSFSISENWMEEQRMYVGTVSVSASSVQLILQNRIAGRYTNNNSWQFFSPNDTSMNRVNFIQSINYQFGKTA
Ga0228700_100041258F000934GAGMSLQTILSISESVGINDQRFVGQTLSRNQKIITSELLTVVPFEFTMKPMNYLLYSQNRSVLAALRAADKSLEQNLNFGSTGWLNYIKYQGDMTGAQIAACQWQTSSAAKTLVLGSLPSIASTLYIVKTGDFVQVGRYAYIVTADVQRGIGTTVNIPVHRALMATLSAPVNAVIGQYGTTVSIGGSTYTGITFPVILRQYPTYTLVPMTNDSFLQWSGTFNAIESVL
Ga0228700_100041267F012668N/AMAIARFENVDVNNLTFGTDAVGEYTTTISKWFTTRARVQDVKNNLEIDSKYRVYQDLVNLIFNYTPNMKEVVDNQNLYSITWRGLDWRITDVFESNDRMNVRLLCYRNDPSTRV
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