Scaffold Ga0228710_1043054

Overview

Basic Information

• Taxon OID: 3300022740
• Scaffold ID: Ga0228710_1043054
• Source Dataset Name: Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1212
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Nodule → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0136
  • Long. (^o): -118.4673
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002299	Metagenome	573	Y
F021933	Metagenome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228710_10430541	F021933	N/A	RLRRGGKADAAFGLRLLLSQHQPQKDTSKEGLFDPGVVLISYESILRSMCPSENALEVRASGVRSESFALGKRFAVATLTASLSPRAKLRPRLLVISGRLFRHPRSKSAPAKIS
Ga0228710_10430542	F002299	N/A	DRLAVSVATAKRLPSAKDSLLTPDARTSKAFSDGHMLLSIDSYEISTTPGSNNPSLDVSFWG