Scaffold Ga0228711_1003274

Overview

Basic Information

• Taxon OID: 3300022739
• Scaffold ID: Ga0228711_1003274
• Source Dataset Name: Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25137
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (38.10%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → Hologalegina → IRL clade → Trifolieae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Nodule → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0136
  • Long. (^o): -118.4673
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018675	Metagenome	233	Y
F050939	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228711_10032741	F050939	AGGA	MCDQNNLKDQSVTNLKLKGLKCDRNNLKDQSIINLKLKGPLM
Ga0228711_100327414	F018675	N/A	MAIKDEKQNKKICKDENIQFNFLGTKIKIRYIYKDEKLI