Scaffold Ga0224569_100374

Overview

Basic Information

• Taxon OID: 3300022732
• Scaffold ID: Ga0224569_100374
• Source Dataset Name: Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3799
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F044385	Metagenome	154	Y
F098478	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224569_1003741	F006757	N/A	MRNLAVLPPIKSNARIALLDLTTFQDISTPDLIAMAQAMPGGTKVQIPDRLTAIVLILGTRLVDTD
Ga0224569_1003742	F044385	AGGAGG	MLIRNNDGEVTGEMNVSITQDGTVIRTNTMYQNGRPVTQNISIRDTQGGVRTTNVIGGKILP
Ga0224569_1003743	F098478	GGAGG	MSKAKNGKAVDVKKAAAGDKPELNGNGKAEKTKAVKIQTLTPANTKLVKRGFVKMFVDFVMKRGSVTTDVLAAEFAGRQVEGKKITKQRVLRYAHWCVNKGVLKAR