Basic Information | |
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Taxon OID | 3300022732 Open in IMG/M |
Scaffold ID | Ga0224569_100005 Open in IMG/M |
Source Dataset Name | Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13434 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (89.47%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Source Dataset Sampling Location | ||||||||
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Location Name | Czech Republic: South Bohemian Region | |||||||
Coordinates | Lat. (o) | 49.043 | Long. (o) | 13.6183 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002288 | Metagenome / Metatranscriptome | 574 | Y |
F003851 | Metagenome / Metatranscriptome | 465 | Y |
F019690 | Metagenome / Metatranscriptome | 228 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0224569_1000051 | F019690 | AGGAG | MKNTKFLVKVIRGTRAAEYVQRIDRTPVQTTLKRNLALVMGRLTAEDVVTSLGNSRCTPELV |
Ga0224569_10000511 | F003851 | AGGA | MRKAQGCKEKRKPDDDRKARVLRALRESMRGRINRRDPLTEQLRQCPEAFKVGEILGKAIDSFKYGQDEPSADRLLPPPGAVIPPLV |
Ga0224569_1000055 | F002288 | GGA | MGETDGVHKRRVFRWPNEATELAREYKERANGRQKHTESDRRRLVTKLAEVSGNPRDACLRFLRELGVNQKRAYREWTKPEQQRLMDLVSSMPVEEAAKILRRPATSVRSMLHRLGVGGKTGREWFTKFSLSRALHTRPDEIQKWIDRGWLRSRSLTTAGTKANIIDPDDFCQFVKQHGHAVVSRRLTYEALWFVQHYVFPASHADLLSVRGTYKKQTGSEENSNGEFQSESGSDKDREQDT |
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