NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224563_1004159

Scaffold Ga0224563_1004159


Overview

Basic Information
Taxon OID3300022731 Open in IMG/M
Scaffold IDGa0224563_1004159 Open in IMG/M
Source Dataset NameSoil microbial communities from Bohemian Forest, Czech Republic ? CSU4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1016
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0427Long. (o)13.6161Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005065Metagenome / Metatranscriptome413Y
F014038Metagenome / Metatranscriptome266Y

Sequences

Protein IDFamilyRBSSequence
Ga0224563_10041591F014038N/AMKVTLEDALSLLGKYVDERTPVLAVFVTPSVSIARVTGLIHISVVDVVGPHLIVGKDDGTSDQIKFRLSDCEFSYGDFRDASAEDFGADKFEGFLVVGFSKGDTLSLFEIKTGA
Ga0224563_10041593F005065GGAGMMDANHISERLSSLRQEMSDLRVTTAVFWNKGQHTALEKSAFALRKGRLLEIKRELSDMMKRCA

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