Scaffold Ga0224566_100110

Overview

Basic Information

• Taxon OID: 3300022728
• Scaffold ID: Ga0224566_100110
• Source Dataset Name: Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6107
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.044
  • Long. (^o): 13.617

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F001709	Metagenome / Metatranscriptome	648	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224566_1001107	F001709	GGAG	MPQEVSVSYQAIKSKVYRLIDTLVVGEKSEIEVQESIRRWWELIHPADRPIAQKYLLIVLGRSGQALSAIEEGLTDAANTDESCKPLESVRFKLIERVVKTNGKAAALSQ
Ga0224566_1001108	F000249	GGAGG	MKTSLWILVFPLFTLTLCGAQSAPPAGNSQSSGTQSSTVSISQSEDRMFFPKDMFWGWAQFDLAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGELRRFMVFGAPSFLFGKTIPQTLYTWSPDAIGVEHSWGAGIYIGKGFEFRVTQHFLFDRLGARDTNLGVADLGNNGPWGRYMTVGVRKSFGTRRW