Scaffold Ga0224567_101183

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224567_101183

Scaffold Ga0224567_101183

Overview

Basic Information
Taxon OID	3300022727 Open in IMG/M
Scaffold ID	Ga0224567_101183 Open in IMG/M
Source Dataset Name	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	751
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0431	Long. (^o)	13.617	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F008441	Metagenome / Metatranscriptome	333	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224567_1011831	F008441	N/A	SAATDLRIQLGKAVFQTHSEQLQGIRNTMPPTAVGEAINTLRAVLRDVPEEFPDRNREVNRFLAPLASAIHAIMKDQDIDIPLTSRVEHIATGGVAKYPDIVKISLDELAAEFEGSCS
Ga0224567_1011832	F001698	AGGAG	MAGVINDIEALAEFRAHLMRFNHDLAENFATIQSHWRELGEVWRDDMYRLFGEALEEVTPGITQYLSATEGHEAHLAALIERLRGYFETGAGAGLGVSRPETSRGNGSRTERRD

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