NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242665_10009245

Scaffold Ga0242665_10009245


Overview

Basic Information
Taxon OID3300022724 Open in IMG/M
Scaffold IDGa0242665_10009245 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1956
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012495Metagenome / Metatranscriptome280Y
F084683Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0242665_100092451F012495GAGMVILLAIVLSGVLLWLLIPRHKKSRADIASFHSNLNDALPSARHYAYFRQIRQALSAADAKYIVENAPPQVAKQALRDRRAVARRFLKGLHEDFSNLARLGRIIAALSPEVSHKQETERFILGLKFQFLYALVWLRLSTGNLPLQQLEDLTGLVGRLAMRLDTAMTEISALSAGQVAGRIGA
Ga0242665_100092452F084683GGAMNHLESFLSWSTISFEIVVCSFVFTRNVKRILPLFAVYACVLLSCGIGLLFTYEFFGFSSLTSYYVYWGTILLSAVARSLAIAELCRFGLRGYRGIWALVWRVLMVLSILLLARAASDAWGQPNRVAIYGTTLDRDLALASIAILAVLLLIRNYYGLALEPLQRAIAAGICFICAVHVIGNVILRNLYTGSLFSWFLTSQKSLWPALRPQIMRVNDIWSTVHLLSFMFSMGIWCFALRKPLPAPSESPVLLPVEVYREMSPAINMRLATFNDRLVELLKP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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