Scaffold Ga0242677_1003137

Overview

Basic Information

• Taxon OID: 3300022713
• Scaffold ID: Ga0242677_1003137
• Source Dataset Name: Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1468
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007373	Metagenome / Metatranscriptome	352	Y
F007553	Metagenome / Metatranscriptome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0242677_10031372	F007553	GGAG	MFDDKICAVDFCEGAAVASLAQQDFCLNHFIDLCYANLQRIDPRGQKMGRVNLDRASLRAFIEECSRQALDAALRCNDLDNLQRGRLLDILLWAGELFLLLRAPTRGFADSILKQHNTMPTRLAARQF
Ga0242677_10031373	F007373	GGAGG	VSRSVETHSLSNPAAPVDSNALSTSARTLGMCYTSSRITALSIEFVAKPNEAHKVHAALPEAINGALGEVAGFAGCFVMIANHEARLVTVVTLWSGEDRMQRSSENLRWVRALLAPYLDRGLRVQTLAAYVPAALQISQLFEQPCSEEPFEAPLSEEAAMCVA