NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222623_10362092

Scaffold Ga0222623_10362092


Overview

Basic Information
Taxon OID3300022694 Open in IMG/M
Scaffold IDGa0222623_10362092 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)553
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035648Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0222623_103620921F035648AGGAMNEHCTPEANRNTFDGDAISRADREFLASLSDHPLVQHPLYSIPPPPRPNYDGCITIDERAEAQRACFPAALDWMLVNYAYYTGAFIGKGGIISLVDGEICSIASLRSFMQPYTIVEEGPRGGLKKTSVVDVWMMHPQRAQIDKVQTRPD

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